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1

Important contribution of macroalgae to oceanic carbon sequestration

Ortega, Alejandra, Geraldi, Nathan R., Alam, Intikhab, Kamau, Allan A., Acinas, Silvia G., Logares, Ramiro, Gasol, Josep M., Massana, Ramon, Krause-Jensen, Dorte, Duarte, Carlos M.

Journal:

Nature Geoscience

Année:

2019

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2019

2

Biogeography of bacterial communities exposed to progressive long-term environmental change

Logares, Ramiro, Lindström, Eva S, Langenheder, Silke, Logue, Jürg B, Paterson, Harriet, Laybourn-Parry, Johanna, Rengefors, Karin, Tranvik, Lars, Bertilsson, Stefan

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2013

3

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

Logares, Ramiro, Sunagawa, Shinichi, Salazar, Guillem, Cornejo-Castillo, Francisco M., Ferrera, Isabel, Sarmento, Hugo, Hingamp, Pascal, Ogata, Hiroyuki, de Vargas, Colomban, Lima-Mendez, Gipsi, Raes,

Journal:

Environmental Microbiology

Année:

2014

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2014

4

A data mining approach to dinoflagellate clustering according to sterol composition: correlations with evolutionary history

Leblond, Jeffrey D., Lasiter, Andrew D., Li, Cen, Logares, Ramiro, Rengefors, Karin, Evens, Terence J.

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.60 MB

english, 2010

5

Different bacterial communities in ectomycorrhizae and surrounding soil

Vik, Unni, Logares, Ramiro, Blaalid, Rakel, Halvorsen, Rune, Carlsen, Tor, Bakke, Ingrid, Kolstø, Anne-Brit, Økstad, Ole Andreas, Kauserud, Håvard

Journal:

Scientific Reports

Année:

2013

Langue:

english

Fichier:

PDF, 637 KB

english, 2013

6

Extensive dinoflagellate phylogenies indicate infrequent marine–freshwater transitions

Ramiro Logares, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Karin Rengefors

Journal:

Molecular Phylogenetics and Evolution

Année:

2007

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2007

7

Phenotypically Different Microalgal Morphospecies with Identical Ribosomal DNA: A Case of Rapid Adaptive Evolution?

Ramiro Logares, Karin Rengefors, Anke Kremp, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Torstein Tengs, Aaron Shurtleff, Dag Klaveness

Journal:

Microbial Ecology

Année:

2007

Langue:

english

Fichier:

PDF, 544 KB

english, 2007

8

Recent evolutionary diversification of a protist lineage

Ramiro Logares, Niels Daugbjerg, Andrés Boltovskoy, Anke Kremp, Johanna Laybourn-Parry, Karin Rengefors

Journal:

Environmental Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 273 KB

english, 2008

9

Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny

Kamran Shalchian-Tabrizi, Jon Bråte, Ramiro Logares, Dag Klaveness, Cédric Berney, Kjetill S. Jakobsen

Journal:

Environmental Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 9.97 MB

english, 2008

10

MARINE-DERIVED DINOFLAGELLATES IN ANTARCTIC SALINE LAKES: COMMUNITY COMPOSITION AND ANNUAL DYNAMICS

Karin Rengefors, Johanna Laybourn-Parry, Ramiro Logares, William A. Marshall, Gert Hansen

Journal:

Journal of Phycology

Année:

2008

Langue:

english

Fichier:

PDF, 976 KB

english, 2008

11

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA

Bråte, Jon, Logares, Ramiro, Berney, Cédric, Ree, Dan Kristofer, Klaveness, Dag, Jakobsen, Kjetill S, Shalchian-Tabrizi, Kamran

Journal:

The ISME Journal

Année:

2010

Langue:

english

Fichier:

PDF, 708 KB

english, 2010

12

Population genetics: the next stop for microbial ecologists?

Journal:

Central European Journal of Biology

Année:

2011

Langue:

english

Fichier:

PDF, 318 KB

english, 2011

13

Genetic Diversity Patterns in Five Protist Species Occurring in Lakes

Ramiro Logares, Andrés Boltovskoy, Staffan Bensch, Johanna Laybourn-Parry, Karin Rengefors

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 477 KB

english, 2009

14

Infrequent marine–freshwater transitions in the microbial world

Ramiro Logares, Jon Bråte, Stefan Bertilsson, Jessica L. Clasen, Kamran Shalchian-Tabrizi, Karin Rengefors

Journal:

Trends in Microbiology

Année:

2009

Langue:

english

Fichier:

PDF, 292 KB

english, 2009

15

Environmental microbiology through the lens of high-throughput DNA sequencing: Synopsis of current platforms and bioinformatics approaches

Logares, Ramiro, Haverkamp, Thomas H.A., Kumar, Surendra, Lanzén, Anders, Nederbragt, Alexander J., Quince, Christopher, Kauserud, Håvard

Journal:

Journal of Microbiological Methods

Année:

2012

Langue:

english

Fichier:

PDF, 251 KB

english, 2012

16

Thermal Tolerances in Tadpoles of Three Species of Patagonian Anurans

Navas, Carlos A., Úbeda, Carmen A., Logares, Ramiro, Jara, Fabián G.

Journal:

South American Journal of Herpetology

Année:

2010

Langue:

english

Fichier:

PDF, 258 KB

english, 2010

17

Fatty acid and sterol composition of two evolutionarily closely related dinoflagellate morphospecies from cold Scandinavian brackish and freshwaters

Leblond, Jeffrey D., Anderson, Brian, Kofink, David, Logares, Ramiro, Rengefors, Karin, Kremp, Anke

Journal:

European Journal of Phycology

Année:

2006

Langue:

english

Fichier:

PDF, 140 KB

english, 2006

18

Eukaryotic versus prokaryotic marine picoplankton ecology

Massana, Ramon, Logares, Ramiro

Journal:

Environmental Microbiology

Année:

2013

Langue:

english

Fichier:

PDF, 131 KB

english, 2013

19

Patterns of Rare and Abundant Marine Microbial Eukaryotes

Logares, Ramiro, Audic, Stéphane, Bass, David, Bittner, Lucie, Boutte, Christophe, Christen, Richard, Claverie, Jean-Michel, Decelle, Johan, Dolan, John R., Dunthorn, Micah, Edvardsen, Bente, Gobet, A

Journal:

Current Biology

Année:

2014

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2014

20

Phenotypically Different Microalgal Morphospecies with Identical Ribosomal DNA: A Case of Rapid Adaptive Evolution?

Ramiro Logares, Karin Rengefors, Anke Kremp, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Torstein Tengs, Aaron Shurtleff and Dag Klaveness

Journal:

Microbial Ecology

Année:

2007

Langue:

english

Fichier:

PDF, 2.46 MB

english, 2007

21

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

Massana, Ramon, del Campo, Javier, Sieracki, Michael E, Audic, Stéphane, Logares, Ramiro

Journal:

The ISME Journal

Année:

2014

Langue:

english

Fichier:

PDF, 904 KB

english, 2014

22

[IEEE 2008 IEEE International Conference on Bioinformatics and Biomedicine - Philadelphia, PA, USA (2008.11.3-2008.11.5)] 2008 IEEE International Conference on Bioinformatics and Biomedicine - Applying Clustering and Phylogeny Analysis to Study Dinoflagellates Based on Sterol Composition

Leblond, Jeffrey D., Lasiter, Andrew D., Li, Cen, Logares, Ramiro, Rengefors, Karin, Evens, Terence J.

Année:

2008

Langue:

english

Fichier:

PDF, 6.67 MB

english, 2008

23

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

Logares, Ramiro, Audic, Stephane, Santini, Sebastien, Pernice, Massimo C, de Vargas, Colomban, Massana, Ramon

Journal:

The ISME Journal

Année:

2012

Langue:

english

Fichier:

PDF, 599 KB

english, 2012

24

First insights into the overwintering biology of Alsodes gargola frogs and tadpoles inhabiting harsh Andean-Patagonian alpine environments

Úbeda, Carmen, Logares, Ramiro

Journal:

Amphibia-Reptilia

Année:

2006

Langue:

english

Fichier:

PDF, 115 KB

english, 2006

25

Evidence of concurrent local adaptation and high phenotypic plasticity in a polar microeukaryote

Rengefors, Karin, Logares, Ramiro, Laybourn-Parry, Johanna, Gast, Rebecca J.

Journal:

Environmental Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 248 KB

english, 2015

26

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

Pernice, Massimo C, Giner, Caterina R, Logares, Ramiro, Perera-Bel, Júlia, Acinas, Silvia G, Duarte, Carlos M, Gasol, Josep M, Massana, Ramon

Journal:

The ISME Journal

Année:

2015

Langue:

english

Fichier:

PDF, 823 KB

english, 2015

27

Rarity in aquatic microbes: placing protists on the map

Logares, Ramiro, Mangot, Jean-François, Massana, Ramon

Journal:

Research in Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 2.20 MB

english, 2015

28

Ecological and evolutionary significance of novel protist lineages

del Campo, Javier, Guillou, Laure, Hehenberger, Elisabeth, Logares, Ramiro, López-García, Purificación, Massana, Ramon

Journal:

European Journal of Protistology

Année:

2016

Langue:

english

Fichier:

PDF, 222 KB

english, 2016

29

Environmental sequencing provides reasonable estimates of the relative abundance of specific picoeukaryotes

Giner, Caterina R., Forn, Irene, Romac, Sarah, Logares, Ramiro, de Vargas, Colomban, Massana, Ramon

Journal:

Applied and Environmental Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2016

30

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marineAlphaproteobacteria

Grote, Jana, Bayindirli, Cansu, Bergauer, Kristin, Carpintero de Moraes, Paula, Chen, Huan, D’Ambrosio, Lindsay, Edwards, Bethanie, Fernández-Gómez, Beatriz, Hamisi, Mariam, Logares, Ramiro, Nguyen, D

Journal:

Standards in Genomic Sciences

Année:

2011

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2011

31

Planktonic protistan communities in lakes along a large-scale environmental gradient

Khomich, Maryia, Kauserud, Håvard, Logares, Ramiro, Rasconi, Serena, Andersen, Tom

Journal:

FEMS Microbiology Ecology

Année:

2016

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2016

32

Abundant and rare picoeukaryotic sub-communities present contrasting patterns in the epipelagic waters of marginal seas in the northwestern Pacific Ocean

Wu, Wenxue, Logares, Ramiro, Huang, Bangqin, Hsieh, Chih-hao

Journal:

Environmental Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 1.38 MB

english, 2016

33

Seasonal patterns in Arctic prasinophytes and inferred ecology of Bathycoccus unveiled in an Arctic winter metagenome

Joli, Nathalie, Monier, Adam, Logares, Ramiro, Lovejoy, Connie

Journal:

The ISME Journal

Année:

2017

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2017

34

Mixing of water masses caused by a drifting iceberg affects bacterial activity, community composition and substrate utilization capability in the Southern Ocean

Dinasquet, Julie, Richert, Inga, Logares, Ramiro, Yager, Patricia, Bertilsson, Stefan, Riemann, Lasse

Journal:

Environmental Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 1.80 MB

english, 2017

35

Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells

Mangot, Jean-François, Logares, Ramiro, Sánchez, Pablo, Latorre, Fran, Seeleuthner, Yoann, Mondy, Samuel, Sieracki, Michael E., Jaillon, Olivier, Wincker, Patrick, Vargas, Colomban de, Massana, Ramon

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 2.43 MB

english, 2017

36

The roles of geographic distance and socioeconomic factors on international collaboration among ecologists

Parreira, Micael Rosa, Machado, Karine Borges, Logares, Ramiro, Diniz-Filho, José Alexandre Felizola, Nabout, João Carlos

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 632 KB

english, 2017

37

Large-scale ocean connectivity and planktonic body size

Villarino, Ernesto, Watson, James R., Jönsson, Bror, Gasol, Josep M., Salazar, Guillem, Acinas, Silvia G., Estrada, Marta, Massana, Ramón, Logares, Ramiro, Giner, Caterina R., Pernice, Massimo C., Oli

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2018

38

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

Seeleuthner, Yoann, Mondy, Samuel, Lombard, Vincent, Carradec, Quentin, Pelletier, Eric, Wessner, Marc, Leconte, Jade, Mangot, Jean-François, Poulain, Julie, Labadie, Karine, Logares, Ramiro, Sunagawa

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2018

39

Delineating closely related dinoflagellate lineages using phylotranscriptomics

Annenkova, Nataliia V., Ahrén, Dag, Logares, Ramiro, Kremp, Anke, Rengefors, Karin

Journal:

Journal of Phycology

Année:

2018

Langue:

english

Fichier:

PDF, 356 KB

english, 2018

40

Contrasting prevalence of selection and drift in the community structuring of bacteria and microbial eukaryotes

Logares, Ramiro, Tesson, Sylvie V.M., Canbäck, Björn, Pontarp, Mikael, Hedlund, Katarina, Rengefors, Karin

Journal:

Environmental Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 919 KB

english, 2018

41

Sinking particles promote vertical connectivity in the ocean microbiome

Mestre, Mireia, Ruiz-González, Clara, Logares, Ramiro, Duarte, Carlos M., Gasol, Josep M., Sala, M. Montserrat

Journal:

Proceedings of the National Academy of Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 1.06 MB

english, 2018

42

Weak Coherence in Abundance Patterns Between Bacterial Classes and Their Constituent OTUs Along a Regulated River

Ruiz-González, Clara, Salazar, Guillem, Logares, Ramiro, Proia, Lorenzo, Gasol, Josep M., Sabater, Sergi

Journal:

Frontiers in Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 3.62 MB

english, 2015

43

Seasonal succession of small planktonic eukaryotes inhabiting surface waters of a coastal upwelling system

Hernández-Ruiz, Marta, Barber-Lluch, Esther, Prieto, Antero, Álvarez-Salgado, X. Antón, Logares, Ramiro, Teira, Eva

Journal:

Environmental Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 2.74 MB

english, 2018

44

Microzooplankton distribution in the Amundsen Sea Polynya (Antarctica) during an extensive Phaeocystis antarctica bloom

Swalethorp, Rasmus, Dinasquet, Julie, Logares, Ramiro, Bertilsson, Stefan, Kjellerup, Sanne, Krabberød, Anders K., Moksnes, Per-Olav, Nielsen, Torkel G., Riemann, Lasse

Journal:

Progress in Oceanography

Année:

2018

Langue:

english

Fichier:

PDF, 2.01 MB

english, 2018

45

Quantifying long-term recurrence in planktonic microbial eukaryotes

Giner, Caterina R., Balagué, Vanessa, Krabberød, Anders K., Ferrera, Isabel, Reñé, Albert, Garcés, Esther, Gasol, Josep M., Logares, Ramiro, Massana, Ramon

Journal:

Molecular Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2018

46

Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy

Gran-Stadniczeñko, Sandra, Dunthorn Egge, Elianne, Hostyeva, Vladyslava, Logares, Ramiro, Eikrem, Wenche, Edvardsen, Bente

Journal:

Journal of Eukaryotic Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2018

47

Summer comes to the Southern Ocean: how phytoplankton shape bacterioplankton communities far into the deep dark sea

Richert, Inga, Yager, Patricia L., Dinasquet, Julie, Logares, Ramiro, Riemann, Lasse, Wendeberg, Annelie, Bertilsson, Stefan, Scofield, Douglas G.

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2019

48

Diversity patterns of planktonic microeukaryote communities in tropical floodplain lakes based on 18S rDNA gene sequences

Machado, Karine Borges, Targueta, Cíntia Pelegrineti, Antunes, Adriana Maria, Soares, Thannya Nascimento, Telles, Mariana Pires de Campos, Logares, Ramiro, Vieira, Ludgero Cardoso Galli, Huszar, Vera

Journal:

Journal of Plankton Research

Année:

2019

Langue:

english

Fichier:

PDF, 5.75 MB

english, 2019

49

Important contribution of macroalgae to oceanic carbon sequestration

Ortega, Alejandra, Geraldi, Nathan R., Alam, Intikhab, Kamau, Allan A., Acinas, Silvia G., Logares, Ramiro, Gasol, Josep M., Massana, Ramon, Krause-Jensen, Dorte, Duarte, Carlos M.

Journal:

Nature Geoscience

Année:

2019

Fichier:

PDF, 1.93 MB

2019

50

Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics

Castillo, Yaiza M., Mangot, Jean‐François, Benites, L. Felipe, Logares, Ramiro, Kuronishi, Megumi, Ogata, Hiroyuki, Jaillon, Olivier, Massana, Ramon, Sebastián, Marta, Vaqué, Dolors

Journal:

Molecular Ecology

Année:

2019

Langue:

english

Fichier:

PDF, 1.10 MB

english, 2019